PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G098300.1
Common NameB456_009G098300, LOC105769110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 702aa    MW: 77592.4 Da    PI: 8.792
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G098300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07583633148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++l
  Gorai.009G098300.1 583 RRPFSISEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTLL 633
                         56788899******************9988889**************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.76E-6387477IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.642578637IPR017930Myb domain
SMARTSM007172.6E-6582635IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10583634IPR009057Homeodomain-like
SuperFamilySSF466894.95E-16584665IPR009057Homeodomain-like
CDDcd116605.23E-17584634No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPTIP RATRSARKRV PFRKRVEGNR ISAFDLLATV AGTLLLDKES  60
SPASNKAWNA EDQSAVEKNN VKEERQDGDQ SLKLETCNVS ELVPQTNDPN YSSRESPSLQ  120
NGTQFGVTSA ITTSERLDSQ KLINGKIKNE MGGLACKVET GPFVSRTPGD CVEPVSENKV  180
LTDEELDRTN KASSGEVADK CPLEDPLVLD GKPPAVVSSD SSIKAPSFGE HDPFISFPIQ  240
QYDVNVVSRD DDEKSSGCTH PSPIREPFRS TPRIGDRRIR KILASRYWKV ALRSKNATYS  300
NYDENLKSGY CNRSTYKRLR SGRNFPFKKR KFLHYTSESN SDGGTIGEGI SDLPEKNING  360
KASILYSKMH GVTGESSSLA DQRKSFNSRD PHVKLRIKSF RVPELFIEIP ESATVGSLKR  420
TVKEAVTAIL GGGLCVGVLL QGKKVRDDNK TLLQTGISRD NQMDSLGFSL EPNPSHTSPS  480
LCPGGSPLTL PHDIPLPLAR YPANPGLVNQ VTCHPSTEPC IPNACDFIES NNDCTASPTD  540
MFDKSTTESK ALVAVPAMSV ETLAAVPVHK KSKQSEVAQR RIRRPFSISE VEALVQAVEK  600
LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLLHTARISP QQRRGEPVPQ ELLDRVLNAH  660
TYWSQQQAKQ QQQQLPESCL PHYNSTMIGS GRCDDDENIL G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-565676711105Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.16610.0flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9643741e-65JX964374.1 Gossypium hirsutum clone NBRI_TRANS-643 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444989.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444990.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444991.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444992.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444993.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444994.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A0D2TGQ10.0A0A0D2TGQ1_G
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-141TRF-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]